Scaffold Ga0335003_0000610

Overview

Basic Information

• Taxon OID: 3300033995
• Scaffold ID: Ga0335003_0000610
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17241
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F071153	Metagenome / Metatranscriptome	122	Y
F083779	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335003_0000610_13308_13703	F083779	N/A	MAKMIFDKEETRNLIMMLKSEDADNHIIAFETLKNVDFKKYVGELLVLYKFGGHTMENWMLNCKKIATKLLDITDKTPLTSPKTLCWITQNKGSKASVELFMEFFIRDMSRMLESIGYPTDKFEIQIKLKD
Ga0335003_0000610_4510_4860	F071153	N/A	MLSGKFIKRNGKLTYATPQDKLAYEIFVDKLQEGDKVDMFVELHGPDHSKAQLAKVHACIRELAKESGYTFEEMKLVIKEQAGLAGKSFGECSKDDLMLAIEACLQIGRENYNINL
Ga0335003_0000610_9255_9941	F003038	N/A	MALSTTDLGSGGGSSLAKTIAPGNHVLKINSIDLEDFRFIDGAKHLILHVETAPIEGFEGFMLDKDDESKGRFEGQIGRVKASQYAYADGETKSGIKIQRDRSVLIFLQSLSKTLGINDWFVGQDGKHDTIETFVDAFNATAPIKDLYLEFCVAGKEYLNKSGYTTYDMWLPKAENRKYAYGEIEGGKIIPYDESKHLKKLEVRDVNNFGGDDDFTTPTATSSDFSLD