Basic Information | |
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Taxon OID | 3300033995 Open in IMG/M |
Scaffold ID | Ga0335003_0000243 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27826 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (6.06%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F012010 | Metagenome / Metatranscriptome | 284 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F074450 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335003_0000243_12056_12475 | F048248 | AGAAG | MNISVNYDDTDVAKALSKIIKDPNSEEFVKLITPMICSSAQACNQFFKLMLGNKLPDVMPVGTLCKLEVSQLGYGSNKDEIRAKYADADDKIVVKVKEFRGYHEYSDYEVTYNNIKPNGDINIESTYTSTRQLDIIEEI |
Ga0335003_0000243_13550_14074 | F000716 | N/A | MYMIMEKQNTKQKFEYSGNLENYQLINQRPTVMQYETDCYSQYQNYLYKRALYGLEALSPQEMSAMCSKKKQRVINVYKRAQVVLNKFKQQVTIQYTNVFFKTLFPNSPITDFLLSEVETDEKFKNTLTFKDLNISKEQIIGIFMSEGILPKNFLSLERDPNHLPRLKNEVKSM |
Ga0335003_0000243_17895_18329 | F074450 | N/A | MEDYTKDDVITALSKILMNSRQRVLVDQRSYLMGLLAFRFMMTEHAIAKATGIKRDKVNYNKKLVLQFCKDKSYIQNVYVYAQMFPFDFNVIDSSRPNRLKRVELDLDQKFFNKLKATGSILGHDDIRITIKFLLEKSMKLWEE |
Ga0335003_0000243_25888_26478 | F012010 | N/A | MEEIFNRLIKEDLSPNTYYVLHCIKEKIVPNQFVNAALESKRLQKDNWINDDLQLTAKSHIFMEEINSFFRKSKKKTSRDLMGDEFSQKILEYVNIFPNKKLSSGKYARVNPKNLESTFRWFFETYDYDWETIISATERYVDEYSLKNYEFMRTAQYFVRKQNMDKSFDSDLATYCDLKKSGYDDDNYDAFKELVV |
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