NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0294991

Scaffold Ga0334996_0294991


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0294991 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F029089Metagenome / Metatranscriptome189N
F038589Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0294991_1_414F001981N/AMTYPTLITIPKSDICKAEIAQIAQQLTDRINEGEVNPIEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFQAFGAEITLKEGSLTPNYEEDPIYADLKAQMKAREELLKIAFRQAGKTSIFDESTGEQVPVCTAK
Ga0334996_0294991_411_632F038589N/AMSLLQQMNADEFRKLLEYKEKYPTLGEELVKALTDKIVIIHLTVAEYISLCDALGIYCAPALNEVFQAFKSKP
Ga0334996_0294991_629_808F029089N/AGLVPSYDELTTATLKADFLALLDKLPKEQHDKFMKDIDHMTPARFEKGIQFIQNQLARP
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