Scaffold Ga0334996_0084747

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0084747
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1879
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008546	Metagenome / Metatranscriptome	331	Y
F037129	Metagenome / Metatranscriptome	168	Y
F048842	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0084747_12_191	F037129	N/A	MNVNKKDYKVVEEKDGYMTWYLVKKKFLWFFWKTIKNNSGSPMRYTSRKAAQAYINFLK
Ga0334996_0084747_1227_1496	F008546	N/A	MKTAVEWWKLLIVFVSAIVLEANSIAGLRFLMDEKWVGMVIMVAINPFLCLPMNHYTIEVKSFKQRALIAFAFSLGFAVGVMTIRPFFI
Ga0334996_0084747_1613_1840	F048842	AGAAG	MKYLKLFKMKNKTGVVLITLLPIILWGLAIFGEIRCIYKMCICNWEPIGKAEIVYTVGTFTGAGVVIGYLGIEDK