Scaffold Ga0334996_0032391

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0032391
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3333
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004255	Metagenome / Metatranscriptome	446	Y
F075870	Metagenome / Metatranscriptome	118	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0032391_1380_1616	F085168	N/A	MIRYLRIWLWQIVSELEQRLYPYEKEDANDFYYTVKNEETGESYMIIEWIKSFDERIIRLQDEMIYVQSQLRNVKNDP
Ga0334996_0032391_2419_2610	F075870	N/A	MIKPIKEEFPHPGFPVKIVHKDGKDLKDKKTCYFQCEAHAKKYIERCKFKKKDYTITFQGENE
Ga0334996_0032391_2806_2982	F004255	GGA	MNEKAKIYYNVWCCAHQRRHLYRGTPREQREHATVLMCLQMKDAKWYQFDTEKPKHLK