NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0021194

Scaffold Ga0334996_0021194


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0021194 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4222
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046328Metagenome / Metatranscriptome151N
F101005Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0021194_2136_2828F046328N/AMGLSTKDLVNENGGGGMAKTIAPGNHTLKINSIVLEDFQFIDGAKHLILNVETEPIDGFEGFLIDKDDESKGKYKGQIGRVKASQYAFADGQTKSGIKIQRDRSLMMFLANLSKATGIMSWFEEQDNKFNTIEDFVKNFSNNAPLKDKYLDFCVAGKEYENKSGYTAYDMWLPKAENNKYAYGNEGSERILKYDEAKHLKKLEVKPVDNFGDDDDDFPTPGKTSSDFSLD
Ga0334996_0021194_3565_4140F101005N/AMYNRRDKEKELMEHHSKFLEKLTGGYQFAAKTAFYSKGKFGRQIQFFENELNKGTDIYVELVDIERDARGHEINMIPMFWERPLFKYRYNPYFKEEYEVKTSTNSRGDEYSVYVIPTSELVCVNKGAEEIPYNSYETQRTEEPKEQKKLSVFPDFEEEFVPKLKTQETDEDISSILLQIAEGFQKLAQKFK
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