NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0007108

Scaffold Ga0334996_0007108


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0007108 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7584
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F004314Metagenome / Metatranscriptome444Y
F005727Metagenome / Metatranscriptome392Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0007108_4305_4457F004314GAGMYDDYDLDYTFANDYSLDEDTYADLGTSDLDEDYARGGQDYQDLAYRHYA
Ga0334996_0007108_620_823F000744GGAMDEIQVNLNAHEVGILLAALQNLENIDEIYIARDYGSAPALYNKLYSLWEQMDTSTTGLRYDLTPSF
Ga0334996_0007108_7225_7392F005727GGAGGMIRALTCARSPEFHRATMLRLTIAALLLWGFWGPLQPVRNVTADLLSTSADLLRR

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