Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0001725 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0001725 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14899
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (70.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14899

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (70.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F006218	Metagenome / Metatranscriptome	378	Y
F011150	Metagenome / Metatranscriptome	294	Y
F051076	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0001725_10820_11098	F006218	N/A	MSKRKQILKSCGNCHICGKEHLSNEGGWVINAEKLNFCHSLEHSCYEIYFNNVRAKEKQALVSNNNNDKRMEMYIEYLKKQKCKHKYATEKV
Ga0334996_0001725_2504_2971	F051076	N/A	MAGFKSKKIFCSGMSKLSGKPCQAKGFPTNSFNKHGFQIYKCRFHGGQNTNFYGFRDRTNRGGYNKPGYTDEKKIKSLASLKQFRDKDLNYVRNYYETKVKPRIDSLGRYNSKYSIRAVKRRQNSSKYKEGRDITDQLDQVLSILESRGKQRDQI
Ga0334996_0001725_7851_8024	F011150	GGA	MDLNYYQKQHDKIKEQFRHDIIMRKLKEREDRLYRNMFIKLSLVIVIALLLMTLIAR
Ga0334996_0001725_8235_8840	F004111	AGG	MKEKIKQVNDLCAANGAYLNQHGKKTVSAWSKIKYFREVFGNEFGINCVIQEHSDRYVIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSFMGILLEDVTSKEEYEELDIPVQPVNTKGTSSANNRYDESTINELIKKVHYAPHTAKLDFLWRANRELLDQVKIKDLATYNSILNRFNSKRDEITTQNEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0001725

Overview

Ecosystem & Geography

Associated Families

Sequences