NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0001573

Scaffold Ga0334996_0001573


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0001573 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15442
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y
F053297Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0001573_11193_11405F053297GGAGMITTPQVKIVNVETGEEIVRDANAEEIAQMKIDADNLAAAQIEANAKATARQEILNRLGLTAEEAALLLG
Ga0334996_0001573_12137_12328F002269AGGAGMNRKQLEAAAKSYARAALAAVAALYMSGVTDPKVLANAFIAGLIGPLLKAVQPSEKQFGIGAR
Ga0334996_0001573_13050_13664F007029AGGAGMGFLDNYEDVNARIKRFRSEFPSGRLIAYIEDIDMIKGTVLVKAEAYREYEDTVPSAVDYAFGNVASLTQNMKRWLIEDTVTSAYGRCIGLLTPSLEYSSRPTAQDMQKVETLPADSDPWSTKVAHEGIPTMATAVKEIAANLGGEQVAEPPRCAHGTMIWAEGTAKATGKPWAAYKCTEKNRTNQCNPYWHVLGSDGKWKPQV
Ga0334996_0001573_13890_14414F029049AGGCGGMVVCSVSGVAKVILDRSQEIVAHQKGLDRAVAINADPSDANQFGQKFANYHEFIWQKAEGAGAEMAVAAYFGDYGFVPKVNTFHDEADVGENIEVKWTKHQNGHLIIQNRPNPRPNDVAILVTGFSPVYMLLGWMPVHMAMTPRYKHPHQDNYWVPRSSLFEMQYLKRSNYGDI
Ga0334996_0001573_14401_14565F030767GAGGMAIYKTKCRLCGKMTDHIERVVTDNLPPYVKSLQCVKCGVMGVVLMEDVKDADI
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