Scaffold Ga0334996_0000611

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000611
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22995
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F034153	Metagenome / Metatranscriptome	175	Y
F062691	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000611_12952_13704	F034153	AGGAG	MAAQQGFQYEINAAKVLKPLGLVPKSFVPAGAGHDQPDLMLEYKKIKAGCELKITAASAGSLVLKYDSSDKKNPWKFGDIKKDDDEKMFIKELAEEVGLFDFIKKQWKEVPYKRDKDLKWEATAGKMTPQQRYERDRDTFKDIRGEISATKIEQYYNKKATYYVNVGTHGFYLMGKKNPLKLKNVPAFGSSAKATYRARVQYKGSGNYQFTFEMQFAIPSAKKSPYNIAPVNGKNVTIITKDLNLSCFDI
Ga0334996_0000611_21676_21984	F062691	AGG	MSEIKCFTFKTHQTIMGEVTDDGNIGFTLKNPMQVIAVPPRSANDSGGVGFAPYLAFVEEFDRGINFKYDDVLTVNTPVADLLSQYNRMFSRIEIAPAGLKL
Ga0334996_0000611_21981_22211	F020339	AGGAG	MSIIAKIAKQLAEANPKLPKAYKYDLAMREFDNKVELIGLVDDPTYNIEDFRGREMLFPKKWVTLDVLESTTQVTV