Scaffold Ga0334996_0000220

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000220
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33225
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (16.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002391	Metagenome / Metatranscriptome	564	Y
F003127	Metagenome / Metatranscriptome	506	Y
F032999	Metagenome	178	Y
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F075866	Metagenome	118	N
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000220_13431_14144	F057881	GAG	MKQLEIKLPTTLSACTPEQMTRWLMMAEAMKEQRDDDITQLLIFQCQLLSLFSGESINKIKRADIESIQVAANHLLQLLVTYKYQEPQPEIEVNGKVYCFEKNFGYVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNEVRYKEFKENFPGDEFLNFFSFFLDLSDKRRLAILGIQMARQRMEMMMMEQDLKIQSGSVGQLSFIDYPKKWESVWQRLHNSLM
Ga0334996_0000220_14211_14735	F075866	N/A	MADFDFLEDFGISAQDAEQPKNAYDRFIIELSNQLATEFRDYTKKVAQNTGALAASIIPVPTGQLSFRLEAEDYFPFVDEGVNAVGTNNYGSQFSFNYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLRPKNITENVINDQVLDRIANDLAEMTGLMFQINFTKNGSNNI
Ga0334996_0000220_18827_19093	F002391	N/A	MANSNSVLTAQQGTFIVNNTVAKTVDHDAIIVLEDTVFSAIRVAGTDVKSTYIAATGTAVKAGAIIRPLRGAKFSGVTLTSGSVCLVL
Ga0334996_0000220_26768_27286	F003127	N/A	MTLGYNDRTCTNGKGGIKSVMIFPLGNVSASTVLDNEITALTVTGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVALVEKADGTVVALGFGEGLQIAEASAYGSGVLKSDRLGHDIIMGGLENDPVPDVLGSVYLSLLAQQSPSI
Ga0334996_0000220_32663_32944	F080976	N/A	MKKPGRPKKNLNINIDTKNVDIKITRKDGVTDVKVDTPKVDVELHKDKDNKSIKVDSDKVDVEINNGEVKLDVSEQSGLIGKIAKILLKRFKK
Ga0334996_0000220_728_949	F032999	N/A	MSTAHYEYWWQKSGRFNIDLYNHFLRAKRDEEFQSNIQSQGCQVDNPTENNSSQQSRGCNQADGYVATVNFKS
Ga0334996_0000220_8156_8662	F066704	N/A	VEFWKKEAYLIASKITGGNPISSDLVSHVYLLVHELNIRPEDLPRVFARYAYNQYNWRDSTFNKLFKTYDELPDMDSRQSDEEAYEVTKAQELLDDYLHQSPEDDQKMFTKEITKMHLMGMTYREIRTLTGISLDTIHLAIKQFKYDLSDYNNFTNRICESSPELQSS
Ga0334996_0000220_9943_10683	F065712	GAG	MNQSHISESLTGLDQGLIEKYQLMEYISPILPTIFMGMYRDEDLNLLSGHIGDATIVWFGSDAKDLREDWVDMVNKFVNIAVSHQVMDTLESKGVDAIYYPFNAVVPHHWELVPNGEKIFWYSGNSPEYYGESLINEIKERIKIPIIRAGHDTFTKEELKDVYSQCFLNLRLTQHDGCPNTNIEMGLMGRRSIYNGDLPGSIPWESVDDICQSIMREYSTRHVDNVYISKIYHNFVNYERMSTLFI