Basic Information | |
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Taxon OID | 3300033994 Open in IMG/M |
Scaffold ID | Ga0334996_0000152 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38446 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (71.88%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010302 | Metagenome / Metatranscriptome | 305 | N |
F017131 | Metagenome | 242 | Y |
F017484 | Metagenome / Metatranscriptome | 240 | Y |
F021757 | Metagenome | 217 | Y |
F024955 | Metagenome | 203 | Y |
F045756 | Metagenome | 152 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334996_0000152_13904_14251 | F017131 | AGGAGG | MSFPGSYNFNYYRGDTAEFVIRPKTSNGEAFNLSGFTGKFFIATARGAGATQYEAQAVVSSSAATVTCTILPGVGRNLVAGTYLYDVQITSGPSVIYTILTGSITVTDDITGAVS |
Ga0334996_0000152_14254_14832 | F010302 | N/A | MVDVLLNTENVVVLGPPDQIDVLVDIGPQGIRGNKIIVGEGNPNEITTDGVILEQSLILNDIYINTSPGADYGYMYQYISAPGGNTWDEALRVSPAIYSSIKTVQFTSGSGSITIPISNIVTVTGSPLSASNFSIQYQIEGTTPIASSLEIPELAGSGTNLVININAAHYSSGSWATLPNGLRKVHVFISIV |
Ga0334996_0000152_14868_15350 | F024955 | GAGG | MAVENIGNLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETEASELLNPSIAYTINSLQNQITTKAALEVAARDISRVSTTAPTSSAFTAFSNTIPNGYVWLDKDSSAGVGYYSATSVYTETAPTTNLANGLIWIEKGSSPLTMYVWNADTSEWDEIGA |
Ga0334996_0000152_5820_5990 | F021757 | AGGTGG | MMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFSDDNANFKHEKFREACMK |
Ga0334996_0000152_6923_7099 | F048982 | N/A | MTSTQLIDVLNTCRKIRGNNHDSGTHYLLGYLWASFSDKEKLRIAKLFEKDLKEIQNE |
Ga0334996_0000152_7197_7343 | F045756 | AGGAGG | MTKYNVLISYVVEAEDEMRAVFALQKSLYPLSENEIAKFDAFHVEEVQ |
Ga0334996_0000152_8132_8341 | F017484 | AGGAG | MSIEIFRMNESGAGWVDIESATTVELLDLELAITFNAPMQMLCFKCHTPIPKGNVCASHKNIRGAIYFE |
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