NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334996_0000152

Scaffold Ga0334996_0000152


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38446
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (71.88%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010302Metagenome / Metatranscriptome305N
F017131Metagenome242Y
F017484Metagenome / Metatranscriptome240Y
F021757Metagenome217Y
F024955Metagenome203Y
F045756Metagenome152Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000152_13904_14251F017131AGGAGGMSFPGSYNFNYYRGDTAEFVIRPKTSNGEAFNLSGFTGKFFIATARGAGATQYEAQAVVSSSAATVTCTILPGVGRNLVAGTYLYDVQITSGPSVIYTILTGSITVTDDITGAVS
Ga0334996_0000152_14254_14832F010302N/AMVDVLLNTENVVVLGPPDQIDVLVDIGPQGIRGNKIIVGEGNPNEITTDGVILEQSLILNDIYINTSPGADYGYMYQYISAPGGNTWDEALRVSPAIYSSIKTVQFTSGSGSITIPISNIVTVTGSPLSASNFSIQYQIEGTTPIASSLEIPELAGSGTNLVININAAHYSSGSWATLPNGLRKVHVFISIV
Ga0334996_0000152_14868_15350F024955GAGGMAVENIGNLVPTKIPALIDDANIQDALRAYHYGSYDFDTAETEASELLNPSIAYTINSLQNQITTKAALEVAARDISRVSTTAPTSSAFTAFSNTIPNGYVWLDKDSSAGVGYYSATSVYTETAPTTNLANGLIWIEKGSSPLTMYVWNADTSEWDEIGA
Ga0334996_0000152_5820_5990F021757AGGTGGMMTRKDYVAVAEILSSYKDLIGDEFTFEDLVEDFSAMFSDDNANFKHEKFREACMK
Ga0334996_0000152_6923_7099F048982N/AMTSTQLIDVLNTCRKIRGNNHDSGTHYLLGYLWASFSDKEKLRIAKLFEKDLKEIQNE
Ga0334996_0000152_7197_7343F045756AGGAGGMTKYNVLISYVVEAEDEMRAVFALQKSLYPLSENEIAKFDAFHVEEVQ
Ga0334996_0000152_8132_8341F017484AGGAGMSIEIFRMNESGAGWVDIESATTVELLDLELAITFNAPMQMLCFKCHTPIPKGNVCASHKNIRGAIYFE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.