NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000114

Scaffold Ga0334996_0000114


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41761
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (20.00%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Associated Families19

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F002303Metagenome / Metatranscriptome573Y
F004306Metagenome / Metatranscriptome444Y
F005090Metagenome / Metatranscriptome412N
F005630Metagenome / Metatranscriptome394N
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y
F011393Metagenome / Metatranscriptome291Y
F011935Metagenome / Metatranscriptome285Y
F021979Metagenome216Y
F024788Metagenome / Metatranscriptome204Y
F028510Metagenome191Y
F054034Metagenome140N
F055733Metagenome / Metatranscriptome138Y
F063369Metagenome / Metatranscriptome129Y
F067472Metagenome / Metatranscriptome125Y
F084236Metagenome / Metatranscriptome112Y
F088906Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000114_10038_10286F011075N/AMNSFETHLGIIVGSHLNDAMIEVSINPQLAKKRMKFVKALTFFNEDLTKGVTDEYCNWLWDELFENQRWGGPYIKGTNYETK
Ga0334996_0000114_10445_10978F010836N/AMATSNFHNVNASAIFAVPLENEFDYEDLVDNLKSELNNDSDYVDYGKTDPNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLSKSAATKYAKLADKKAEKLKNEIVEKLEAIYNDYSEKYGVTAVFSNGETIYHKL
Ga0334996_0000114_11482_11718F005630N/AMNLYEVDGFYGTRNRGTILVYETRSGKRWYCVEGSCNINCTYDEIGEGCDVERLSDFDTMTSRDGINSVDELYDFVIN
Ga0334996_0000114_11729_11983F002303N/AMDIREQCRERATKFAIDYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLTMCKANCFI
Ga0334996_0000114_14319_14897F005090N/AMKKKMKFVWCGVNFELPAECLRTTDYWGKTLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATVNVCNADGSDLDLNSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENRAPHGTWPSAIKTLKGLIAGEYVFGPLSIEKAIEKAKSYGYSESTINKVLELV
Ga0334996_0000114_19173_19367F028510N/AMKNTLKQRTYECKCGALTKEYVWDNDLDKTKVECSECSKQLTNKNLVSTNTNWAASIRTPTKNR
Ga0334996_0000114_20881_21243F024788N/AMSLDEKTMKLNEQRFATIVILCNVLDTEEGVTDHIKSAICASLINMLQRSMNDDDTGLVNLINNSIDNFCAKVEVERGIENYRDTLSETVNLAKKLVDELNTKAKRIKEGEDILKGICLN
Ga0334996_0000114_21267_21524F088906N/AMEKQLAKIVNKGLAGEPENIVIQVIDTLKIFEFSQIKHVNEADVIRDVVLIDGELFQPEIQHILSNMAHEANITFDENDNVTLYF
Ga0334996_0000114_24883_25212F011935N/AMIKEIQNFDKVYDEQIYPADGMVYTIEKANVIKTYSEPELLYYFQVKNERTKYQIAIFADNKNQHNIAAVYKTGEQAPLFMDKFMSSVHFKNKEFFKTYVVTLINQALK
Ga0334996_0000114_27655_28011F063369N/AMIVAITFSILAFILGVQLIIKFTTNELDRPYRIIRRQYYDVGKLKNEYYVVQKQKQFLFIKYWSGVECEDSWDTTNVPSFENFDEAYTLLQKCKQQKPLNGFKDVVEVEWTKYPMKVN
Ga0334996_0000114_32275_32547F004306N/AMSLAQRELGETFRKDNNKQMSNKHIDVIRFDNSKIHIKEYLNGGQLPNTLTYQPAIIKMIGARLLVVNPDNNEEYYDCRYDDCTIKRING
Ga0334996_0000114_34817_34954F055733N/AMAPIIYMVQTMVWIAHNDRKRADEITKKVTRFGEANGLKYIVIEK
Ga0334996_0000114_36825_37142F067472AGGAMLTIDNIQNIEGKEFQLSSGRKYVIGIGRAYYDHYSFGVFPLYENNVPSIKDAIVYKLHRTKKSRRGYKLVAPKMSWQPYVKPENLTLDNFVLELHIQTAQICSQ
Ga0334996_0000114_37462_37785F021979GAGMLTIENINIINSKFAGTPEWKIGEMFIGEENYIFQIHKRVGEWTIRGVEHKELTVRLHRIKAIDGYIMETGLVKQNYYGRSVYSIEYMRTINSFIFCLDAHIKRIIC
Ga0334996_0000114_37779_38099F084236AGGMLTINNQYKLVAEDIVVSKNGINEHWIVDDVAEMPGVYDIVVLRKLGIFDTIKRTIRVIREKNELGMYSVQIIQRGKIIDKDQIRLRNIQTAEGMLNELKTIMEFI
Ga0334996_0000114_38101_38397F054034GGAMLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTTAMTEFIMIGTINTLDRMKKHLIYIHDKYKIPF
Ga0334996_0000114_40724_41026F000785N/AMNWAEELLGPSKCKAIAFTWDTEEESLGWYNWDETIWINLAQCKRMISVQKTLLHEWTHAQQTFRWYNHYNLKVGYKNNPYEIEARENEKLVKRAYKKRK
Ga0334996_0000114_41029_41337F011393N/AMGEQIAYNKCEHCNVELHTNDAGEYYPVVNRLDKHTLMRGEYIPIGNHFQYPRNWGRKKGATILLETRIADKIKVLKDTEAELSKLQACLDKVNEWDETVLN
Ga0334996_0000114_9065_9493F010084AGGAMDITEEVIKHLKNNIKTKIGVSSIDGVGVIAIRDIKQYEEVFPIWDYETGIYIIPIDRLDEIPNEVVDLLNMYFINDECGYKVIRLFKGLNFLFHGFSYCNSAWPNEHNVNITNNGIAMRDIKAGEEVLEWYYENINLENLK
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