Scaffold Ga0334996

Basic Information
Taxon OID	3300033994 Open in IMG/M
Scaffold ID	Ga0334996_0000024 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033994 Open in IMG/M

Scaffold ID

Ga0334996_0000024 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73805
Total Scaffold Genes	115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (59.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

73805

Total Scaffold Genes

115 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (59.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031405	Metagenome / Metatranscriptome	182	Y
F062565	Metagenome / Metatranscriptome	130	Y
F064508	Metagenome / Metatranscriptome	128	Y
F082112	Metagenome	113	N
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000024_10263_10553	F062565	GGAG	MPKYIVEQLSCFRNVHVVEAETEQEAIAISEQADDNWQEWLGCLKVDVNHFSDERIAYFKEKDYFWNGVSYKDADGYIGYIHPSGEKVERKEIKIK
Ga0334996_0000024_19258_19650	F031405	N/A	MMIRIYSKSKKKKLTKKQLQEQQDFIASINKIPLPSGGKYPAAATQKVKEKSLMPYRVPRDVVSAPSLPDTHKGALTKTGIMKDYHKLSPADREIVNDVASCTAPMHKGNYVYVTPGMNPAGLGRKNEVL
Ga0334996_0000024_20251_20478	F064508	AGG	MSKLKDWLVTKYLNFETQAVKAMQTADFYGNLFTERQKFYIAVFFMLLMLMAGLYGAVQFIGLVYIMSKLTPEDK
Ga0334996_0000024_22002_22532	F082112	GGAGG	MLSFKQYEQLDEGNPLARLHKHAEEGRHYAVMSSQRPHDEVSPEDNKKRHEELKKKLTAQGYAHKEVEGHWEGGKEKSILVHAKGKGDEHGKQLLHDIKKHGEHYNQDSILHHDGKTATLHGTNKTGFPGHGKTETVGKMAYNKAHAPFQTEMKPKSDKPLKPGRTAKSSARFTTE
Ga0334996_0000024_90_254	F095154	GGAG	MYAVGDRKFKRLAAAVGYAKKEFVRTGVVLGIEPVVVLNKTPGYVDYLAKGMKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334996_0000024

Overview

Ecosystem & Geography

Associated Families

Sequences