Scaffold Ga0334996_0000001

Overview

Basic Information

• Taxon OID: 3300033994
• Scaffold ID: Ga0334996_0000001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 243241
• Total Scaffold Genes: 329
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (23.10%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F006935	Metagenome	361	Y
F010320	Metagenome / Metatranscriptome	305	Y
F014137	Metagenome / Metatranscriptome	265	Y
F014735	Metagenome / Metatranscriptome	260	Y
F017826	Metagenome / Metatranscriptome	238	Y
F028510	Metagenome	191	Y
F059964	Metagenome / Metatranscriptome	133	Y
F068845	Metagenome	124	N
F090389	Metagenome	108	Y
F097324	Metagenome	104	N
F105186	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334996_0000001_149053_149442	F068845	N/A	MAIILPGGFNITNSEPVDARFALANQSARYGLSLANVYKGLIVFQQDDSTMWVLTDTANVGNPNGWTQLQIGAVTSNLPAGVISSSQQVIDIFNANFTSGSSMATTVDTEFATDYEVFVTSSVADGGEW
Ga0334996_0000001_17369_18055	F097324	N/A	MSINRTKNFIATIPMKSEEQVIEIKKVLEQIFGWVVLKGRHSDRKSVVKNWMKWKQNDVPWRLAQYIDVYLHPKNPNYNSTKGIHRQNMKLNDNSVITARMLGNMKLSFADGHYNTIQSKGGTPYQVIMNMHNKTYHKVVVTQTPKVHRNSKKPYGMVAKQIWQFMKVRHDASFTEIKTYYDVDIRGNKTMIDGGSFIHHHQSLRKPSTKRGWYLAKKPNGRYTLNVC
Ga0334996_0000001_20934_21128	F028510	N/A	MKNTLKQRTYECKCGALTKEYLWDNDLDNTKVKCSDCSKLLTKKNLVTQTTTDAVSIRTPTKNR
Ga0334996_0000001_23345_23758	F010320	N/A	MNYYQIVAFAQTLKSKNMKSNNENAFINDAYDEESKLHIEFMSEVKRHDYSYMMSDDDRVYRNGRSVEKQIEEKLHALINICKYDASDLLDEVLTNVKQEYNDRDSNGDDLTHRVIKGWFKPYTETERKLFTLNNDR
Ga0334996_0000001_238872_239147	F003626	N/A	MKEFIQKYQKAIVGTGAVSVLLICYYQQKELAKLRSEVNKITTSTTIDSLATENFMLKTQNGRYELSLEHLYEVNPTAAKQFDEYLQSETE
Ga0334996_0000001_24871_25188	F014735	N/A	MITIKNIDKIVSINSQDIEVMDWKQEPDYYQFTFEHDNIHSTTFVAKMNRHHDWGDTDSYRMRLWDGINSSPLEYNFGLHDIENPFTLLNYLKDVLYDWDNITNK
Ga0334996_0000001_33309_33500	F006935	N/A	MEKQYAKQIIEWAETAKETLTLRKEIIIDETITNEKLGEIVRMMYNAKVRAENDSIERCKQFI
Ga0334996_0000001_37857_38126	F014137	N/A	MLTIQNPQKLIGEKYNETFTIIGVKEHKHHYEFTLGYDASIKPAVETILLHRKQTDNGMYVMEYNSKTLWLNKDEFDTIDKIIICMQTI
Ga0334996_0000001_40583_40726	F017826	N/A	MEKIKKIWNLVYVPTAFILGGLNMWIGETGIGCLFILFATNETINKD
Ga0334996_0000001_41077_41505	F090389	N/A	LLVTPFYPLISATPGLFFIKANLMNIKEFKRNHALRVMTWCKHNIGLNGRRHYLPILEWHSSGEDCGDYDFEDNIISVYKSQHNSVLEIIHTIIHEWCHYKQSKQKYYKFDEELGYNKNPLEIQADKIANELKFKCRKDLFY
Ga0334996_0000001_41895_42269	F059964	N/A	MNSRLTNQFSEVAFNTARNEKPVYLNFAASKMSQAVKPNSVVEFKDFMGRSHKVVCKNNTEIKKAMAFFSELKKESLAITRIIAQYPMSYGQVTKKFIPEVRRELKGIGLNNKSIEKVLIMYWA
Ga0334996_0000001_50473_50850	F105186	N/A	MDINKLLKLTNMYAKTDWKKYFHEESSPAVKEYIETNADRIYPWILTIIKQAVDEKLDEVAIIKFTDTKMFATIQRNEYTDLLNKIMEHFIEKEEYEQCAHIRDLITTLSIPHIKPKRKYTKRER