NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0176877

Scaffold Ga0334994_0176877


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0176877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F010534Metagenome / Metatranscriptome302N
F042163Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0176877_18_470F007918N/AMCDTTLEESDPFLNLELDIEAGINQELSSIKQELLSILTNVETVTEAMNRAILKEEDRREQFRTLCSLIDHLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKREMEKVLSQQRIEKFQTNPQQEERRPQKG
Ga0334994_0176877_480_908F010534AGAAGGMSDRIGEKQETIMNLIDLEIKKALKDQASRLEILQERIKDAIDIGTTEHSQGIKQLMLFVTKAHVQAWIASLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALNNRNEETRNRVLGELLEKTITKIEALSVRVPQVPQQ
Ga0334994_0176877_905_1174F042163N/AMNLTVKITEQVEKKLEAVLKGRYDNRTIWMYYKVSLQMLRDIIENLVSCHHTTYTLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLD
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