NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0090516

Scaffold Ga0334994_0090516


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0090516 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1816
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013403Metagenome / Metatranscriptome271Y
F091623Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0090516_2_331F091623GGAMPNLTLITLTAPNLPLTYCPSNYQQLANDIISGTQATFNSAIGNSFFNFGSTTPALNNQVYPWLDENGDWWVFNGGYWARQNPVAAGSSERRIFVGTSTDVLSYDGGDGT
Ga0334994_0090516_333_1787F013403N/ALTVSPNLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTNLRRATDDEIKTGKMMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSVQAPVDRDTWKNLNYPIQAISLLTSGALGSRSAITVNGDVFYRSVDGIRSFIIARRSFSDWGNTPISGEMMPIVENDQTNLLWASSAVVFDNRLLMTSQPRYNAQGVIHKALAVLDFDLITSMRQKFPPAWSGIWTGLDVLQILKTENAYGDACFAIARGSDGSIQIWEITKSNKFDSNLSDPKKEIEWQVQTRAYNFELPFGLKKLDSGDIFIDSLSGSAAFYVQYRPDQYPGWIEWADWTECAIVDQCLTGLCPLTNFQPQYRPKMRLPTPGDIACNESISTPARNLYEVQLSIAVSGYCRIKSIRVHAYDVQESPVGECRTYQGCKVLGGCDIDPFTYTSE

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