Scaffold Ga0334994_0062621

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0062621
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2280
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0062621_200_412	F086618	N/A	MKSIQRIATAVENLLNGNLTHARKSARGLTYSDIFDWLTGPVGWPENRSRAIADYLIGRIDYRTYCNADR
Ga0334994_0062621_2066_2278	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGTQILELIIEREDGDVLCSGT
Ga0334994_0062621_712_1326	F010673	N/A	MNPRLIPILERIIARETILSSFHADRLPQSALAYVRQHYLNDNFLWLTPEEQDLLESLPPFADNLSESIRPGGGIGNPDSSVYHLFDDGSLWLKTNAYSSVWTDATDFAVEILLPRMELSRMDADLLRAIDMEDAVESVLADFYSSFAQILNRDCGIPYSDAREHWTAYSRQLGDGAREEAELGGSESGRKEGIRFASEYTVKA