Scaffold Ga0334994_0008258

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0008258
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7243
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050988	Metagenome	144	Y
F093507	Metagenome	106	N
F098909	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0008258_1775_1927	F050988	N/A	MTRDISDEHAAYRAALEQIARYKHTPRAYRHTKFEQLVKIAQEALASDEA
Ga0334994_0008258_1924_2235	F093507	GAG	MKRSDLIHQPDVWPLLAAKIPEVVDGIGEMIEAVTRRRDFNEQIEAKYRAGEVEHERDWLKWNDPHRFIIEAAEELHDLIVYQAMLLVWLDAELSDDAASVTL
Ga0334994_0008258_2232_2498	F098909	GGA	MTTTTITITPAYLPRIRDGAELANIIHESTFDAFNMHDVDFDLAVVHTLIAKITTALADECDTGTTADGDVYHLVPVTTYIPTEKAAA