Scaffold Ga0334994_0002066

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0002066
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14688
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F002421	Metagenome / Metatranscriptome	560	N
F010535	Metagenome / Metatranscriptome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0002066_11831_12007	F010535	AGGA	MTEPQIFDYSVYIGVMDNGQEILVQIFTDPDSGKYLQGQIAFRSHASSWGVPIPLEKK
Ga0334994_0002066_12795_13193	F002421	GGAG	MKTCTICKGTIAYPDIQGKTHFVCDGRVPAKKQTPFMQGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWASI
Ga0334994_0002066_4251_4883	F001326	GGAG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVASVDATFNGTYTVRALPQYLFIGIDTQGDLLYDYQIPIADQVLYAKTASDVERVAASGTVTYEPVCTWVTAAQVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA