NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334994_0001816

Scaffold Ga0334994_0001816


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0001816 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15701
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F012108Metagenome / Metatranscriptome283Y
F060726Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0001816_15297_15473F060726GGAMYRTVLLTDREIALLKRVVGDTLHEKILPEAKNLTIIFNRLREIKPLVSNNQFFNYGK
Ga0334994_0001816_3677_4054F012108N/AMINLQLTVREALTLATDSSLSGDMYDKIVTAFEVALGVNQNRTVTITGGMSTDNRISCIKAIRLQTGWGLKEAKDWSDGMVGGWKYDKWIPAAPGTKQSITLKTPEAAQNLLRDLVALGCEGHLS
Ga0334994_0001816_4217_4921F000325GGAGMKVADGNEKLGKGCVVVSRPVGDTCPPSCAFLGDGCYAEQTEKMYPNVRPAGMQNLITEKNRIRAMILEAIRKGKSIRWHERGDWFLNGELDTNYVENVMWACESIVSEGTALPDMWFYTHIYDSRLVAFEKYMNVYASVHNDSDMNEAKAHGFKLFAWCDSDEKIAPKRPRSKAKAEAWRKSLPKLVVLNGTKFVTCPEIRRGRGIVTCTPTKGSVSCELCVKGLGNVLFPSH
Ga0334994_0001816_5680_5940F006543GGAGGMQKFAFSVDVVATELDRDAVAESIRECLEGCLPGDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAANPKKSKTEKETVEA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.