Scaffold Ga0334994_0000824

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0000824
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22743
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012435	Metagenome / Metatranscriptome	280	Y
F017968	Metagenome	237	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0000824_13689_13958	F017968	N/A	MKPTKSLIGLEKANNLATLSLQERLNLRETMRQSEAMEWIRRFKKKSLEEGRGEAHYWFQQVIADIAKKRGQAAADELRKRMNDLKNKK
Ga0334994_0000824_19948_20175	F065786	N/A	MVTVTKEGTAQMTKDDLISLLRMTGAQENSIEAVCAAYDAGWNDALDDYAKRIEPLPFGKVTIDSFSIFIKDAKK
Ga0334994_0000824_22358_22591	F012435	N/A	MRLRLYKSLDMSDIDLVKYGVLWQKVESMEAKIDKMEAQLDTLIELANKGRGGFWMGMALVSGVSSIFGYISHYWSK