Scaffold Ga0334994_0000010

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0000010
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146059
• Total Scaffold Genes: 216
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (67.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F060726	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0000010_128158_128349	F007110	N/A	MDFERYEFLVETGRKMICKDCSVENRAVGFMDWGHKTAPSLVLVPANATETIRKLDRANRRAR
Ga0334994_0000010_128554_129012	F007305	N/A	MKIINKTIRKAYNNWNPTRLIRCYHYAAAFDGTKLICFTQNNPIKTHTGAYKIGEDFNLPKYKEHPFYHAESHLISKLLDRYNTIDLSWSVVVMRINRKGLILGSKPCENCDKLLSSVGLTDIYYSTDCGNFSDSFGNLVQVDQLTVPMSMV
Ga0334994_0000010_145523_145681	F060726	AGGA	MTDKEIALLRSVISQTLHEKVSIDRNNLTIIHNRLRQIAPLKTNNQFLNYGK