NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0178710

Scaffold Ga0334992_0178710


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0178710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057098Metagenome / Metatranscriptome136N
F074381Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0178710_189_605F057098N/AMALSLIQMSHRRIDNEPGNEFVASQIVDDNFIRLLSEILRFMLAWTVPLTLREIALYKYFKLDPVGYEHDKNLKTGLFDSPPLVDSIENRVSIRMEELMKQGEEVLVSTPKPEDPNRAQTLVEERKKLESLSNWFVWE
Ga0334992_0178710_624_1070F074381N/AMTGESVLDYFWREFAAIEWATDMTLGDMFDVSLWTHRLCGSLCDLLLASQSSRPSQYNLNTVSANILGYVFNIYRCKMGQLSINLEIDQHWVNYETQSDREIIKHIRKLQEILIANKIILNEGSNQPQQPYALSRYRADVQSDQDLGYE
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