Scaffold Ga0334992_0139268

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0139268
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1259
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F078705	Metagenome	116	N
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0139268_3_356	F078705	N/A	MYIAVDAIASEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYV
Ga0334992_0139268_487_744	F093847	N/A	LTINLRKTFARVVYYIEQTNQGKSKETILKELELSEEEFQFLLNTMLSISKLKDNEATISSIQIKEEIFIGGIYLTAHNKDLISL
Ga0334992_0139268_734_985	F039139	N/A	MFLNSFEFTSEDIVNILRAHDTDITIHQIAEIHDVLDHDSIVRSALQYDDPDMQLKSALSKAEDLMIMDGLFITEPKRFHVDD
Ga0334992_0139268_988_1257	F060908	N/A	TRKLDYTVSESITTQSKNRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISACPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL