NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0070578

Scaffold Ga0334992_0070578


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0070578 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1926
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039139Metagenome164N
F060908Metagenome / Metatranscriptome132Y
F093847Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0070578_1109_1399F060908N/AMTRKLDYTVSKTISTSEKISTQTKNRIHIPKKYASYIGLNKGFVAHITNLNGAYIITAYPTPESKKYMVDKDGAVRFTVEKNEYKIMIADSVVVIL
Ga0334992_0070578_1402_1653F039139N/AMFLNAFEFTSEDIVTILRAHDTDITIQQLAEIHEILDHDSIIRSALQYNEPNIQLKSALSKAEDLMLMDGLYITEPKRFHVDD
Ga0334992_0070578_1643_1900F093847N/ALTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTAHNKDLISL
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