Scaffold Ga0334992_0005054

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0005054
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9483
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0005054_1693_1989	F058146	AGGA	MNLSQLTAKPQLILVKLDDEETITEYKEAIEFYTWDRQPMDVFMRLASATQDNTAGIIDIVKTLILDETGKEILTKDNVLPTNVLMKAISKVTDMLGK
Ga0334992_0005054_3_449	F002260	N/A	TSLNVVWDPYFKVASQEWLYKLEFGWWTKYCDTVFGASYYTNNQQGQLISAFNPSLLIKDDQTLIRLDTFGAIEVFYESLVTDVSNMNEVDLQNYEFSKNRCQNEWIKALELMNFYDLSGQNPDGPTTKLEENWTADVDYFNNDRRFF
Ga0334992_0005054_449_889	F058142	AGGAG	MASTILNAPLVTTQDIINVLQRDIPKAWAVPIYDDFPSDTDVVRYGVYVSDVHTVERNPHQLGIQYCATIYHAYDQFSIVYVSFQDDPHNIDLNAIIANLVTAYTSNGQILFDGYFERNFDQDLVYGPNAEKHVWTFRLLRLEFNT