Scaffold Ga0334992_0003979

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0003979
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10904
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (30.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039944	Metagenome	162	Y
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0003979_2606_2815	F056323	N/A	MIKLFSLQEMADDLKLPPAVVALWAADGYIPHIMRDGLPLFDPVAVGKHIAKQLNELNKIDDGNKPTTN
Ga0334992_0003979_3165_3395	F072111	N/A	LPQNRKVKRKGGGMKKQMILALAIFGHLFLFLFVDSLFEAPTKWKMWAFYGSSLLSVAVWAAYVIHEDDNPKGGAA
Ga0334992_0003979_3596_3904	F046179	AGGTGG	MSRPQWENDALLAIMRDGVAIEDAPWVLECIQKAADDIAEMDDADQFPLYIEYHGNDKAALCNIDAETFADVLACLGIDLNRLETLWGRKHIDPPTDDWSME
Ga0334992_0003979_5344_5487	F039944	AGGGGG	MKASNLFLSLALLALLGFAIAVTSGKLGGPSDLEMRVRASEPLNLEP