NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0003469

Scaffold Ga0334992_0003469


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0003469 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11725
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006107Metagenome / Metatranscriptome381N
F013755Metagenome / Metatranscriptome268Y
F032255Metagenome / Metatranscriptome180N
F085372Metagenome111N
F103227Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0003469_10558_10737F013755N/AMISDTPISDSTPHNVADLGMLCRRFERFAVGRQVYILELEAENDALRADLLLWSEKEVK
Ga0334992_0003469_10734_10964F103227AGGAGGMSNTLKIKTLPNNDFAFVYVHRKNGAIRVESLDTAKHVDGSPEWKHVSTLNPYVCLENILTASTRQRTQYIRDLLK
Ga0334992_0003469_1113_1595F006107GGAMNAAALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVISINSARPMQRSDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNRILPLFDDTGASALNAPSNDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL
Ga0334992_0003469_1608_2075F032255N/AMANSQGLAYQFGSPASVTMYGINNVDAVFSALASIESYDITHEADTEEVRNSGGEVVGHIGYNERVTLNLNLIPSGADATAALAFCSLAPVNGTVAISGAPNISMMGTANILNTGRFIYAGGGSVKMTQSGKAMVSITVKKYKNLTTAAAVALNV
Ga0334992_0003469_44_322F085372GAGGMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
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