Scaffold Ga0334992_0001648

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0001648
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17507
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F013504	Metagenome	270	Y
F045619	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0001648_11561_12172	F000220	AGGA	VSEEKPADVLGKVLSYVDSPFKLFALVLMAVFAFSGYFIWQNQAFLFEAYKENKKLPTIAEDRAEDVAAHLFKNTNATVVAIFKVNPLFGTRVLYRAYTREGRERTHEGLDVGLFTQSASNNRDVVALMANDIPCSEYAVPQSEIGLWYIDKGVRFGCRVSVPPEQGRFVGQITVGWDKEPKDLTKAIGMLQIASNMLSKSKP
Ga0334992_0001648_6589_6891	F045619	AGGAG	MAFVWTINSLQVMNTPEPQTVVMSNFTIAKDGQQVNYSVNLLPANPDDFTPFDQITQAQALEWTQAALGPERVAAMENEVDMLIAQAAIPTPQPAPLPWN
Ga0334992_0001648_6896_7165	F013504	GGA	MALKITAINNTNGQSETQAYARITNFFGTKDQLQVQVEIHATEEARRAGWPSIQQQAHYINMEDLSGDLIPAIYEVLKTFTQYAHAQDC