Scaffold Ga0334992_0000208

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0000208
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51295
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (14.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024315	Metagenome	206	Y
F068814	Metagenome	124	Y
F093410	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000208_12482_12721	F093410	N/A	MEVKYAVQKQLIPTDVNAGDPNWAKRQIWVYKLNSDDTLDEFDTIEEAQSKRDELDNNDPTARVYRVVKKIDSFNFEVV
Ga0334992_0000208_15876_16391	F068814	N/A	MNEDLFGSSLKMKPHEALLVKSVVSFMMDKYGFNAKIIVKKKEKAGMIGDISLNSNSVNSGKFYLHFNPNQSYKRVIQSMIHELTHVKQVVKKELLPNKEYSAILWKGKEYINVKDYGKLMKSDIASYVKLPWEMEADTNMKNLYSTFINSKYWKDLKGKDATLDYIIDNI
Ga0334992_0000208_27629_27895	F024315	N/A	MNYSQLSKLSVEELRSINQMVVQLIKQKRTIESLEKKIGLEVGMKVKVNHPKLQGRELEVVKINRTKANLRVVGGYASYNVPVSMIQY