Scaffold Ga0334965_0008146

Overview

Basic Information

• Taxon OID: 3300033991
• Scaffold ID: Ga0334965_0008146
• Source Dataset Name: Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6064
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Croatia: Zadar
• Coordinates
  • Lat. (^o): 43.9359
  • Long. (^o): 15.5428
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079543	Metagenome	115	Y
F082076	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334965_0008146_2864_3142	F082076	N/A	VSGRERFSALKNLERAEKRFLLCFLTALAGGIYWLVVELWGLNVSDLLTLPVHRVVSVVFGACLTATSVLAILGYLSIGLVVERAVEIRPRD
Ga0334965_0008146_4054_4425	F079543	GGAGG	VAGELARELADFPFAKLKPQSFRVEIAGLSERELEKCPVKVWIETDDITKALKTAGFARIIRAYPHLGFVYLETYARELASLVASELVRSVWNDLPVKAEGCVVAETHPGARALALRLDRRAR