NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334965_0007440

Scaffold Ga0334965_0007440


Overview

Basic Information
Taxon OID3300033991 Open in IMG/M
Scaffold IDGa0334965_0007440 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6411
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameCroatia: Zadar
CoordinatesLat. (o)43.9359Long. (o)15.5428Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085040Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334965_0007440_4156_4398F085040GGAMAEYLKYGATGVLALIILVVLVPVIRAFVEELKESRRERQEMRKEHNEFVVNHARRTTEALLQVKDGLEQVCRRLNGDER

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