Scaffold Ga0334965_0004152

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334965_0004152

Scaffold Ga0334965_0004152

Overview

Basic Information
Taxon OID	3300033991 Open in IMG/M
Scaffold ID	Ga0334965_0004152 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9229
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Croatia: Zadar
Coordinates	Lat. (^o)	43.9359	Long. (^o)	15.5428	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F086591	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334965_0004152_5425_5901	F086591	AGG	MSLKKHLAKRYIPSSTKWKLVLKGVGKLYRAVYDELEKDEKGSSAKALADAAYRVGLDFGETLKKDFGLGNSIEDVAFAMEIDHKIFGVKAVVAEKDERKIVYHCYQCAWRKYFTPKLCIAIGQAEKGIAHALNSEAKYHVLQTRTMGKDRCIIAIEI

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