Scaffold Ga0334965_0000174

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334965_0000174

Scaffold Ga0334965_0000174

Overview

Basic Information
Taxon OID	3300033991 Open in IMG/M
Scaffold ID	Ga0334965_0000174 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57141
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (70.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Croatia: Zadar
Coordinates	Lat. (^o)	43.9359	Long. (^o)	15.5428	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102093	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334965_0000174_17585_17815	F102093	N/A	MPARSEHKIMKHGTSGVVVIPKPYRDYHHLKPGSNVTILYDSLLLIVPEGLSGLLTQKAELIDRLLGQKPNKKDAQ

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