NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0108368

Scaffold Ga0334989_0108368


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0108368 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1542
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001998Metagenome / Metatranscriptome606Y
F005772Metagenome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0108368_1076_1282F005772N/AMYDMDVGCSLKGSTTSVIAYWDSFDIYIIKDFSKLFQIWGKLCGGNGVNVLPYAHPQLFKVFKHLIYV
Ga0334989_0108368_404_640F001998N/AMSVWKGSHYAIVETVEHFKLHPTSMLYIYKVFEHLKQLWMGLWQHTHTVTTTEVSPDLGEFAEILDDVSVEMILLRYR
Ga0334989_0108368_877_1083F005772N/AMYEIDVVCSMKGSTASTIVYWDHFHTLTSSRISVNSQIWGKVCGGNGVSVLPYAHPQLFKVFKHLIHV
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