NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0077870

Scaffold Ga0334989_0077870


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0077870 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1832
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000211Metagenome / Metatranscriptome1583Y
F001998Metagenome / Metatranscriptome606Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0077870_1200_1364F000211N/AMSFIYKVFEYLQQLWMGIWRHIHSVTTTEVSQDLREFAEILDDVNVEMIPIRYH
Ga0334989_0077870_1399_1563F000211N/AMSYIYKVFEHLKQLWMGICQHTHTVTTTEVSPDLGGFSDILDDVSVEMIPLRYC
Ga0334989_0077870_1618_1761F000211N/AMSYIYNVFEHLKQLWMGIWQHTHTVTTTDVSPDLGELAEILDDVSVE
Ga0334989_0077870_404_643F001998N/AMMKMSKLSQYAITEAVEPFKLHPTSMSFIYNVFEHLKQLWMGIWQHTHTVTTTEVSPDLGEFTEILDDVSVEMIPLCYR
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