NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0064079

Scaffold Ga0334989_0064079


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0064079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001998Metagenome / Metatranscriptome606Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0064079_1166_1363F001998N/AMVEAVEPFKLHITSMSYIYEVFEHLQLLCIDIWMHTHSVATTDVSPDLGELAESLGDVCVQTTPL
Ga0334989_0064079_153_350F001998N/AMLEAIEPFKLHITSMSYIYEVFEHLQLLCIDIWMHTHSVATTDVSPDLGELAESLGDVSVQTIPL
Ga0334989_0064079_1555_1806F001998N/AMQVCKTYHYVIVEAVEPFKLHPTSMSYKDEVFEHLQLLCIDIWIHIHSDTNTDVTNTDVSPDLGELAESLGDVKVQTISLRNA
Ga0334989_0064079_343_552F001998N/AMLEAIEPFKLHITSMSYLYEVFEHLQLLCIDIWMHIHSVATTDVSPDLEELAESLGDVSVQRTIPLRNA
Ga0334989_0064079_545_754F001998N/AMVESVEPFKLHITSMSYLYEVFEHLQLLCIDIWMHIHSVATTDVSPDLEELAESLGDVSVQTTISLRNA
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