NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0048241

Scaffold Ga0334989_0048241


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0048241 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2332
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005176Metagenome / Metatranscriptome409Y
F071979Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0048241_1034_1315F005176AGAAGGMQDPPEQEDKSSPSSSMELKFKLDTRLTVSCVVAVASAYGLLSLSIALDSILLAFGNAVILFVDPVRFVWLARTPGRVQEKVIHGKLNSLIIV
Ga0334989_0048241_124_414F071979AGCAGMDAWDMISPFVIPDFVDPYALSVEDRWGDRKLTGVNLLKNWGKVTLKQCRNWQRDSFNFACTEDLTSMEWAKSLMMNSCDVLLVDRIDEKFDELDL
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