Scaffold Ga0334989_0039220

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0039220
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2580
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011997	Metagenome / Metatranscriptome	284	Y
F019088	Metagenome	231	Y
F048775	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0039220_1154_2047	F019088	N/A	MIEEIKLNGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNEGHKLEMRVIVFCPTIMSTANPIYDSLKYLDDDDIIMEYSDGKLLNKLDEIEKEKEDIENYKKYVEVWKKYMKIDENINLLLPDELLILSKYDFREPADIPHPPYKYPRINFLVFDDLVGDAQAFKKGHSAINNLCIKHRHLQCNLLFTTQYIKAIPPVLRRNLDIFVIFKFANAQSVVEQIYPEISGVIKEEDFLNVFEYATIDKHDALIIDQTSKHVFKLNWDTALILN
Ga0334989_0039220_135_740	F048775	N/A	MNRNIKYKQVCRISLFGDDDINITTGTQYAIGGSFTNSKRMRFALNNSLNDLTLSQNARCVVETCNIPSLTNLAGKYVLLRIVTSTQDKTCDTKKFLNGNPILLSMATVTTVGSNNILYNASEFFYNINVPSNIFSNGYIDMELEVPGATAHIDFVTSKPLKNFFINLIVVDEDAELTKDLTLAPPIDYNNYNINMPIRPY
Ga0334989_0039220_784_1101	F011997	N/A	MSEKTIYDVERAKFDGFGTYKLPIEERVNEIMEVTKKEYPNMDNYLLWLCAVDYVIEEKGLKKENEDGVKMYKEYVKERKIFIYNTVKVVDDDIIKYDYNVLQEV