Scaffold Ga0334989_0013406

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0013406
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4269
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003888	Metagenome / Metatranscriptome	463	Y
F017447	Metagenome / Metatranscriptome	240	Y
F037581	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0013406_1359_1625	F017447	GAG	MFNRAAPKLSRTIGQVADVGRNIGQIVKHGRNIGSIANQLSGNRLSQLPIAQKIQDVANKIENGANFISGNEDKAQQALSTISRKFNA
Ga0334989_0013406_2268_2507	F037581	N/A	MFDKTEYELLYLKYMPKDEYKKLINTYMNELNIPYMTAKQYICLKQMKHLEYENHIKYEQIFLDTYNDIVENGYNISML
Ga0334989_0013406_2515_2691	F003888	N/A	MDAVNDIEILETDVKDCNEKCKRVNCNAIYDAIISSLKLMYDLIFMCCARGPEKGHPP