Scaffold Ga0334989_0006212

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0006212
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5984
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000866	Metagenome / Metatranscriptome	855	Y
F007402	Metagenome / Metatranscriptome	352	Y
F040401	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0006212_1778_2086	F040401	N/A	VNKKRTRKYGHLPSKIVISTPWEALCVDLVGPYTLNGKDGSSIDFMALTMIDPASSWFEVVELPTITRLMTKMVNGKEKLIEEEIFDKSSDKISRLVKKIWL
Ga0334989_0006212_2260_2562	F000866	GGA	MLFDIPFIADWKQIGEYRQSQTDHSNTRENNKRVDYDYKVGDKILIRKDGILRKAESIWKKEPWTITTVHTNGTIRLQCGTKLERINFRRVTLFSEELLT
Ga0334989_0006212_2709_2882	F007402	N/A	MVPTHHAGKFLPKTKGFFSHDFTLIASVVGESVIGHGIGGKHIPAKMARLAESQSLE