NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371488_0019508

Scaffold Ga0371488_0019508


Overview

Basic Information
Taxon OID3300033983 Open in IMG/M
Scaffold IDGa0371488_0019508 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5033
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F016631Metagenome245Y
F025427Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0371488_0019508_2958_3224F002761N/AMVWAGLGKLNELARFVGFKRAKPRESVLRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWYRLSKLESH
Ga0371488_0019508_3_1007F016631GAGGMNRLANLALSVGETLVHEAGRLLFGIALGAAKQLLGTPQPVGTRGLAFPRALQKKTVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENQPHSVDDFNGVIEEGYGKGEKRLIYSATGVIKVGGSCQLGKINVHEHEAEKAGFHYDFVAEGVDPHTESFEVNIANGVLKGRYAFRQAFEENRYLVVRMKDDSVLVAKPDIHLKPPEFLKTLRQSDRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGESYYDKLPAIEDLRNRSPVWLARRLFPGPEQEGTVLRGELHHPDGAARVGGILNALPEKSIRIQQERGPVEFYAWDIAKFKGRE
Ga0371488_0019508_3375_3611F025427N/AMEELLASLGTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFICVTAWGLNWDQEMTAYMDETYKKWKEDNHG
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