Scaffold Ga0334982_0161935

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0161935
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F010397	Metagenome / Metatranscriptome	304	Y
F103125	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0161935_255_440	F010397	AGGAG	MNVNEFERTKPVVTMQKINDLIKLIEDERVKTEILYKDRVRSLDDISILLKDMKSSFKKG
Ga0334982_0161935_427_681	F001840	N/A	MKDQDSIFLICDCYEHGLLVEKFKDENEVSLSLFERGLKGRTLCWSERLRWCWQILRHGRPWCDFVILNTENQKQLKEFLNECK
Ga0334982_0161935_678_1130	F103125	N/A	TLWLHCAEYEYTDGNPNAKSLIEKLPTRKEIKVWWQQIFPITDTVRLYAYDSDTNDTYDYWIEYDVIFVDGKVTEAKLVEFTATDNSERKEKHRKDVEYWTNRQKFEYTLFYRFIGKPYNKTISLICRSIHTSATWITYKIWKVERFLKI