Scaffold Ga0334982_0030772

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0030772
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014121	Metagenome / Metatranscriptome	265	Y
F032252	Metagenome / Metatranscriptome	180	Y
F048267	Metagenome / Metatranscriptome	148	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0030772_1104_1313	F014121	GGAG	MMNNTAYQIWETFKAGLKDEPTEDMKQALASSIRVISSIIHRDGVLANEPWLTHTAQELNEIADDVEKL
Ga0334982_0030772_1525_1701	F032252	GAGG	MTEMKLYRYKKDGHLYTLYEQKMPYYNLVAVPYFPNQGILAKSKRSISMDDFVVVAER
Ga0334982_0030772_1698_1832	F048267	GGTGG	MTDEEWETALKSMNDGVKKWVVEEIDKIKYNVVKDIINGDLEAL
Ga0334982_0030772_474_605	F090316	GGAGG	MPDDLQREEELFFKALKEYKEKKSQEPTDKTTNTLPAIIAAVL