Scaffold Ga0334982_0028915

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0028915
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3172
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F042880	Metagenome	157	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0028915_2_172	F002827	GGAGG	MNKEYYQAKADLCRGLAIKQMVEGEAKEAGANLIRMVNALNQINLINYKEEKDNERL
Ga0334982_0028915_559_780	F042880	GAGG	MSNYRTVGELIEHLKGEDSNAPIIYQYYLAEHFDISEEVFGQVAGDFDSLIPCSDSYEAISREIDSKREEANV
Ga0334982_0028915_773_910	F079999	AGGAGG	MRDIFELSFRWQDGAVQVLIYCAIITGGLYLLSKINIKEREGDNE