Scaffold Ga0334982_0022050

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0022050
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3700
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042880	Metagenome	157	Y
F051794	Metagenome	143	N
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0022050_1919_2068	F079999	AGGAGG	MSDIFELSFRWQDGAVQVLIYALVIYLGLVIISKITDKREREGDNEGKK
Ga0334982_0022050_2257_2478	F042880	GAGG	MSNYRTVGELIEHLKGEDLNAPIIYQYYLAEHFEVSEELFKEVAGDFDSLIPCSDSYEVISREVDSKREEANV
Ga0334982_0022050_3439_3699	F051794	GGAGG	MKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTLGSEQA