NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0019022

Scaffold Ga0334982_0019022


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0019022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4018
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031096Metagenome / Metatranscriptome183Y
F054874Metagenome / Metatranscriptome139Y
F103267Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0019022_1787_2020F031096GGAMMNKETNMVTNLCGGAFELRTGRPWTAGISPFREREALNLRWEKVGPIGGRHFFEINGVQYSAKTITPALKDIQMHG
Ga0334982_0019022_578_751F054874GGAMPDEIKGVTLAVQDLELIKRSLHCYRDMLTRIEESERSPSPELTKVANLFHRLGRIS
Ga0334982_0019022_751_924F103267N/AMEENMEVELFAFPTMENPKAVEDTFCNLLNAQRRGESLPVEALDWMDTANNWLMESK
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