Scaffold Ga0334982_0011816

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0011816
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5169
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F059883	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0011816_1083_1325	F003687	AGG	MSPASIEQLLIQDARLLARRDAPAIDQEIESARQQALEIFYQWQDGLVQFQDLIPFVIVLEKKVDLNRSLLKWEQEHIVD
Ga0334982_0011816_3322_3528	F059883	N/A	MTEENQRYHLIINVDEKYAIVNALAFYHAHHTLGELLDEDEREQYALAFKEDGATLVDTLATKVANTF
Ga0334982_0011816_4290_4508	F001165	N/A	MTALNDAPKPRIPDAIDNQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMTNMSDEDTNALMPGDLQ