NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0011684

Scaffold Ga0334982_0011684


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0011684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5201
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019119Metagenome / Metatranscriptome231N
F047578Metagenome / Metatranscriptome149Y
F048842Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0011684_3047_3250F048842N/AMKNKAGVVLITLLPIILWGLALFGEIRCIYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYLNIEDK
Ga0334982_0011684_4698_4967F047578GGAMKVICIDSSNRPAKIPIEQWIKQGETYTIIKIVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFIPLDTRVLNMEEETVKEADLELI
Ga0334982_0011684_895_1350F019119N/AMESFLGIPSDTSFKMEKKIMDEMLALSADIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDAEIKNMIAMLESSDEENLHMVTLSIKSFRDLRILEHGEYSKVNQVYWKIAKDYPHEILNHEVFMQTMAAK

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